- 16 Sep, 2019 3 commits
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Stian Soiland-Reyes authored
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Charles Hadley King authored
Rename all BCO → IEEE-2791 Object (and similar) See merge request IEEE-SA/BioCompute/crg/bco-schema!1
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Michael R. Crusoe authored
Transformations made: http://biocomputeobject.org/schemas/ → https://w3id.org/2791/schemas/ BioCompute Object → IEEE-2791 Object BioCompute framework → IEEE-2791 standard bco_id → ieee2791_id bco_spec_version → ieee2791_spec_version BCO instance → IEEE-2791 Object instance BCO → IEEE-2791 Object biocomputobject.json → 2791object.json
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- 12 Aug, 2019 1 commit
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Charles King authored
Comment ID: 26446300023 Page: 3 Line: 21 Comment: ".. should be included in the generation of the hash" - Hashsum calculation of JSON object trees are non-trivial and must be clearly defined. Out of scope for BioCompute? Must Be Satisfied: Yes Proposed Change: Reference a formal specification of JSON object hashing, or remove 'hash'. (alternative: rename to 'etag' and have looser definition)
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- 17 Jul, 2019 2 commits
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Charles King authored
RE: Comment #: i-56, are the bundled domain extensions part of P2791 or not? Issue #57 The `extension_domain` folder has been removed. Page: 3 Line: 21 Remove: "Two Extension Domain example files exist... FHIR...SCM" Replace with: "The Extension Domain is for the inclusion of any additional structured information. A valid JSON schema for each extension used in this domain has to be specified. The schema should be name spaced, and it is RECOMMENDED that resolving the namespaced URI will provide the extension's JSON Schema. The URL should be provided in the **required** `"extension_schema"` field."
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Charles King authored
RE: Comment #: i-59, empirical_error and algorithmic_error definition? Issue #60 Comment ID: 26446700023 Page: 3 Line:37 Replace: "Fields in the Error Domain..." With: "Fields in the Error Domain are open-ended and not restricted nor defined by the current BioCompute standard. It is RECOMMENDED that the keys directly under empirical_error and algorithmic_error use a full URI. Resolving the URI SHOULD give a JSON Schema or textual definition of the field. Other keys are not allowed error_domain"
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- 16 Jul, 2019 2 commits
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Charles King authored
issues #60 I think for this version we should not allow additional keys in the error_domain. Any other additions can be put in the extension_domain 'It's RECOMMEND that the keys directly under empirical_error and algorithmic_error use a full URI for their "$ref": value. Resolving the URI SHOULD give a JSON Schema or textual definition of the field. At this time it is RECOMMENDED that no other keys be used in this domain"
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Charles King authored
issue #53 Change: "The error_domain.json is an optional domain that further describes a bioinformatics workflow" To: "The error_domain.json is an optional domain to further describe empirical and algorithmic sources and measures of error for a bioinformatics workflow" - error_domain is no longer **required** in biocompute.json.
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- 01 Apr, 2019 2 commits
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Josh Gay authored
Signed-off-by:
Joshua Gay <j.gay@ieee.org>
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Josh Gay authored
Signed-off-by:
Joshua Gay <j.gay@ieee.org>
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