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Commit 410081a9 authored by Charles King's avatar Charles King
Browse files

Comment #: i-59, empirical_error and algorithmic_error definition?

RE: Comment #: i-59, empirical_error and algorithmic_error definition?

Issue #60

Comment ID: 26446700023
Page: 3
Line:37
Replace: "Fields in the Error Domain..."
With: "Fields in the Error Domain are open-ended and not restricted nor defined by the current BioCompute standard. It is RECOMMENDED that the keys directly under empirical_error and algorithmic_error use a full URI. Resolving the URI SHOULD give a JSON Schema or textual definition of the field. Other keys are not allowed error_domain"
parent 1b6b6ad9
...@@ -41,7 +41,7 @@ ...@@ -41,7 +41,7 @@
"type": "string", "type": "string",
"format": "date-time" "format": "date-time"
}, },
"sha1_chksum": { "sha1_checksum": {
"type": "string", "type": "string",
"description": "hash function that produces a message digest", "description": "hash function that produces a message digest",
"pattern": "[A-Za-z0-9]+" "pattern": "[A-Za-z0-9]+"
...@@ -144,17 +144,10 @@ ...@@ -144,17 +144,10 @@
"$ref": "usability_domain.json" "$ref": "usability_domain.json"
}, },
"extension_domain": { "extension_domain": {
"properties": { "required":[
"fhir_extension": { "$ref"
"type": "array", ],
"items": { "properties": {}
"$ref": "extension_domain/fhir_extension.json"
}
},
"scm_extension": {
"$ref": "extension_domain/scm_extension.json"
}
}
}, },
"description_domain": { "description_domain": {
"$ref": "description_domain.json" "$ref": "description_domain.json"
......
...@@ -3,7 +3,7 @@ ...@@ -3,7 +3,7 @@
"$id": "http://biocomputeobject.org/schemas/error_domain.json", "$id": "http://biocomputeobject.org/schemas/error_domain.json",
"type": "object", "type": "object",
"title": "Error Domain", "title": "Error Domain",
"description": "It's RECOMMEND that the keys directly under empirical_error and algorithmic_error use a full URI for their '$ref': value. Resolving the URI SHOULD give a JSON Schema or textual definition of the field. At this time it is RECOMMENDED that no other keys be used in this domain", "description": "Fields in the Error Domain are open-ended and not restricted nor defined by the current BioCompute standard. It is RECOMMENDED that the keys directly under empirical_error and algorithmic_error use a full URI. Resolving the URI SHOULD give a JSON Schema or textual definition of the field. Other keys are not allowed error_domain",
"additionalProperties": false, "additionalProperties": false,
"required": [ "required": [
"empirical_error", "empirical_error",
...@@ -21,5 +21,4 @@ ...@@ -21,5 +21,4 @@
"description": "descriptive of errors that originate by fuzziness of the algorithms, driven by stochastic processes, in dynamically parallelized multi-threaded executions, or in machine learning methodologies where the state of the machine can affect the outcome." "description": "descriptive of errors that originate by fuzziness of the algorithms, driven by stochastic processes, in dynamically parallelized multi-threaded executions, or in machine learning methodologies where the state of the machine can affect the outcome."
} }
} }
} }
\ No newline at end of file
{
"$schema": "http://json-schema.org/draft-07/schema#",
"$id": "http://biocomputeobject.org/schemas/extension_domain/fhir_extension.json",
"type": "object",
"required": [
"fhir_endpoint",
"fhir_version",
"fhir_resources"
],
"properties": {
"fhir_endpoint": {
"type": "string",
"description": "Base URI of FHIR server where the resources are stored",
"examples": [
"http://fhirtest.uhn.ca/baseDstu3"
],
"format": "uri"
},
"fhir_version": {
"type": "string",
"description": "FHIR version of the server endpoint"
},
"fhir_resources": {
"type": "array",
"items": {
"type": "object",
"required": [
"fhir_resource",
"fhir_id"
],
"properties": {
"fhir_resource": {
"type": "string",
"description": "Type of FHIR resource used"
},
"fhir_id": {
"type": "string",
"description": "Server-specific identifier string"
}
}
}
}
}
}
\ No newline at end of file
{
"$schema": "http://json-schema.org/draft-07/schema#",
"$id": "http://biocomputeobject.org/schemas/extension_domain/scm_extension.json",
"type": "object",
"required": [
"scm_repository",
"scm_type",
"scm_commit",
"scm_path"
],
"properties": {
"scm_repository": {
"type": "string",
"examples": [
"https://github.com/example/repo1"
],
"format": "uri"
},
"scm_type": {
"type": "string",
"enum": [
"git",
"svn",
"hg",
"other"
]
},
"scm_commit": {
"type": "string",
"examples": [
"c9ffea0b60fa3bcf8e138af7c99ca141a6b8fb21"
]
},
"scm_path": {
"type": "string",
"examples": [
"workflow/hive-viral-mutation-detection.cwl"
],
"format": "string"
},
"scm_preview": {
"type": "string",
"examples": [
"https://github.com/example/repo1/blob/c9ffea0b60fa3bcf8e138af7c99ca141a6b8fb21/workflow/hive-viral-mutation-detection.cwl"
],
"format": "uri"
}
}
}
\ No newline at end of file
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